Index

_

__version__ (in module openacquisition)

_calcFragmentIsotopeDistribution() (in module openacquisition.chemistry.isotopes) _isotopeSplineDB (in module openacquisition.chemistry.isotopes)

A

AcquisitionListener (class in openacquisition.acquisition_method) AcquisitionMediator (class in openacquisition.openacquisition) AcquisitionMethod (class in openacquisition.acquisition_method)

AcquisitionMethodPlugin (class in openacquisition.openacquisition) APIConverterPlugin (class in openacquisition.openacquisition) author (in module conf) autoapi_dirs (in module conf)

C

characters() (openacquisition.chemistry.isotopes.IsotopeSplineXMLHandler method) chinese (in module conf) conf module

connectToInstrument() (openacquisition.openacquisition.APIConverterPlugin method) context (in module conf) copyright (in module conf) CubicSpline (class in openacquisition.mathematics.splines)

D

decodeDoubleList() (openacquisition.chemistry.isotopes.IsotopeSplineXMLHandler method)

disconnectFromInstrument() (openacquisition.openacquisition.APIConverterPlugin method)

E

endElement() (openacquisition.chemistry.isotopes.IsotopeSplineXMLHandler method) estimateForFragmentFromWeights() (in module openacquisition.chemistry.isotopes) estimateFromPeptideWeight() (in module openacquisition.chemistry.isotopes)

eval() (openacquisition.mathematics.splines.CubicSpline method) exclude_patterns (in module conf), [1] extensions (in module conf), [1]

G

get_isolation_efficiency() (openacquisition.instrumentation.isolation.IsolationShape method) get_isolation_efficiency_unshifted() (openacquisition.instrumentation.isolation.IsolationShape method)

get_offset_range() (openacquisition.instrumentation.isolation.IsolationShape method) getInstrumentStatus() (openacquisition.openacquisition.APIConverterPlugin method)

H

html_baseurl (in module conf) html_context (in module conf)

html_static_path (in module conf) html_theme (in module conf), [1]

I

inBounds() (openacquisition.chemistry.isotopes.IsotopeSplineDB method) (openacquisition.mathematics.splines.CubicSpline method) Instrument (class in openacquisition.openacquisition)

InstrumentConfiguration (class in openacquisition.openacquisition) IsolationShape (class in openacquisition.instrumentation.isolation) IsotopeSplineDB (class in openacquisition.chemistry.isotopes) IsotopeSplineXMLHandler (class in openacquisition.chemistry.isotopes)

J

japanese (in module conf)

L

language_user (in module conf) latex_elements_user (in module conf)

latex_engine (in module conf) latex_engine_user (in module conf) latex_use_xindy (in module conf)

M

module conf openacquisition openacquisition.acquisition_method openacquisition.algorithms openacquisition.chemistry openacquisition.chemistry.isotopes openacquisition.filters openacquisition.instrumentation openacquisition.instrumentation.agc openacquisition.instrumentation.fragmentation openacquisition.instrumentation.isolation openacquisition.mathematics openacquisition.mathematics.splines openacquisition.methods openacquisition.openacquisition openacquisition.simulation openacquisition.triggers test_isolation test_isotopes test_openacquisition test_splines

O

offset_range() (openacquisition.instrumentation.isolation.IsolationShape method) onComplete() (openacquisition.openacquisition.AcquisitionMethodPlugin method) onScanArrived() (openacquisition.openacquisition.APIConverterPlugin method) onScanRequested() (openacquisition.openacquisition.AcquisitionMethodPlugin method) openacquisition module openacquisition.acquisition_method module openacquisition.algorithms module openacquisition.chemistry module openacquisition.chemistry.isotopes module openacquisition.filters module openacquisition.instrumentation module

openacquisition.instrumentation.agc module openacquisition.instrumentation.fragmentation module openacquisition.instrumentation.isolation module openacquisition.mathematics module openacquisition.mathematics.splines module openacquisition.methods module openacquisition.openacquisition module openacquisition.simulation module openacquisition.triggers module

P

processScan() (openacquisition.openacquisition.AcquisitionMethodPlugin method) project (in module conf)

project_language (in module conf) PY3 (in module conf)

R

readthedocs_vcs_url (in module conf)

S

ScanRequestQueue (class in openacquisition.openacquisition) ScanRequestQueueManager (class in openacquisition.openacquisition) splitCoefficients() (openacquisition.chemistry.isotopes.IsotopeSplineXMLHandler method)

startElement() (openacquisition.chemistry.isotopes.IsotopeSplineXMLHandler method) string_types (in module conf) submitScanRequest() (openacquisition.openacquisition.APIConverterPlugin method) SUFFIX (in module conf)

T

test_estimateForFragmentFromWeights() (in module test_isotopes) test_estimateFromPeptideWeight() (in module test_isotopes) test_eval() (in module test_splines) test_get_isolation_efficiency() (in module test_isolation) test_get_isolation_efficiency_unshifted() (in module test_isolation) test_get_offset_range() (in module test_isolation) test_init() (in module test_isolation) (in module test_splines) test_isolation module

test_isotopes module test_IsotopeSplineDB_inBounds() (in module test_isotopes) test_IsotopeSplineDB_init() (in module test_isotopes) test_openacquisition module test_splines module text_inBounds() (in module test_splines) theme (in module conf)

U

using_rtd_theme (in module conf)

W

websupport2_base_url (in module conf)